Talks and presentations

• Stochastic modeling for the single cell and the cell population: considerations for data-driven methodologies

  • Invited talk given in the Systems Biology Seminar series. Host: Nicole Radde. (pdf).

• Bridging the single cell with the cell population: opening up for data-driven methodologies

  • At the ENUMATH conference, September 30--October 4, 2019, at Egmond aan Zee, The Netherlands. (pdf).

• Bayesian epidemiologial modeling: with little and without data

  • At the conference Multiscale Modelling of Materials and Molecules in Uppsala, June 3--5, 2019. (pdf).

• From the bottom and up: bridging the single cell with the cell population

  • At the workshop Multidisciplinary and multiscale approaches to bridge the gap between molecular and cellular level, October 13--17, 2018, at the Centro di Ricerca Mathematica (CRM) Ennio De Giorgio in Pisa, Italy. The workshop was part of the Program Advanced asymptotics of PDEs, modeling and extreme statistics and their applications to data analysis in cell biology. (pdf).

• Bridging the scales between the single cell and the cell population - computational considerations

  • At the Workshop IV: Uncertainty Quantification for Stochastic Systems and Applications, November 13--17, 2017, part of the Program Complex High-Dimensional Energy Landscapes at IPAM, UCLA, CA, USA. (pdf).
  • See the talk here.

• A case study of Data-driven computational modeling in Epidemics: bringing the dirt to the classroom

  • In the LTH Seminar Series, Lund University, March 6, Lund, Sweden, 2017. (pdf).

• Data-driven Epidemiological Simulations: Verotoxigenic E. coli O157

  • At the workshop Mathematical Biology for Understanding Emerging Infectious Diseases at the Human-Animal-Environment Interface: a "One Health" Approach, November 20--25, 2016 in Banff, Canada. (pdf).
  • The lecture was video recorded (mp4).
  • Related talks were given also in the workshop Scientific Computing in Sweden and in the Bayesian Meeting.

• Stability and strong convergence in multiscale methods for spatial stochastic kinetics

  • At the Spatially Distributed Stochastic Dynamical Systems in Biology at the Isaac Newton Institute for mathematical Sciences, June 20--24, Cambridge, UK, 2016: (pdf).
  • The lecture was video recorded (embedded video).

• Pathwise analysis for split-step methods and multiscale variable splitting in spatial stochastic kinetics

  • At SciCADE 2015, in the minisymposia Multiscale and splitting methods: Theory and Applications, in Potsdam/Germany, September 14--18, 2015: (pdf).
  • An updated version of this talk was given at KTH in the Numerical analysis series (2015): (pdf).

• Towards consistent and effective modeling in the stochastic reaction-diffusion framework

  • In the Mathematical Biology and Ecology Seminar series at Oxford University, UK, May 15, 2015: (pdf).

• Pointless exams at advanced level courses

  • At the internal pedagogical conference of the Faculty of Science and Technology, Uppsala, Sweden, 2015: (pdf).

• Minisymposium Frontiers in Cell Migration, December 12, 2014, Uppsala university, Uppsala, Sweden. Final program (pdf)
  Organizing committee: Stefan Engblom, Johan Kreuger, Mia Phillipson.
  

• Mesoscopic Stochastic Modeling: Diffusion Operators, Multiphysics Couplings, and Convergence

  • In the BIRS workshop Particle-Based Stochastic Reaction-Diffusion Models in Biology in Banff, Alberta, Canada, November 2014: (pdf).
  • The lecture was video recorded (mp4).

• Mesoscopic Stochastic Modeling and the Diffusion Operator

  • In the minisymposium Position-jump models of biological processes on irregular lattices at the 9th European Conference on Mathematical and Theoretical Biology in Gothenburg, Sweden, June 2014: (pdf).
  • Also organized at the same conference (with Stefan Widgren) the minisymposium Data-driven modeling of epidemics: program with abstracts.

• A new take at Adaptive Fast Multipole Methods: application, implementation, and hybrid CPU/GPU parallelism

  • In the KCSE Seminar series at the KTH Computational Science and Engineering Centre in Stockholm, Sweden, November 2013: (pdf).

• Spatial Stochastic Modeling in URDME: consistency, software, and applications to neuronal processes (talk given by Pavol Bauer)

  • At the INCF workshop, San Diego CA, USA, October 2013: (pdf).

• Sensitivity estimation and inverse problems in spatial stochastic models of chemical kinetics

  • At the ENUMATH conference, EPFL, Switzerland, August 2013: (pdf).

• Stochastic Modeling in Reaction-Transport Processes: Forward and Backward considerations

  • In the BSSE seminar series at ETH, Basel, Switzerland, March 2013: (pdf).
  • A guest lecture entitled Mesoscopic Stochastic Modeling of Reaction-Transport Processes was also given (pdf).

• Biologi: en utmaning för Numerisk Analys

  • Docent lecture, Uppsala, Sweden, March 2013: (pdf in swedish).

• Tips, tricks, and experiences with active grading criteria and pointless exams

  • At Gustaf Söderlind's 60th Birthday Symposium in Lund, Sweden, December 2012: (pdf).

• Parallel Adaptive Fast Multipole Method: application, design, and more...

  • At the Parallel Scientific Computing and Programming (PSCP) Colloquium in Uppsala, Sweden, March, 2011: (pdf).

• Simulation of surfactant in diffuse interface flow

  • At the workshop FLASHES on research in Scientific Computing in Uppsala, Sweden, November 2010: (pdf).

• Mesoscopic Stochastic Modeling of Reaction-Diffusion Processes

  • In the KCSE Seminar series at the KTH Computational Science and Engineering Centre in Stockholm, Sweden, February 2010: (pdf).

• Simulation of stochastic reaction-diffusion processes on unstructured meshes

  • At the First Swedish meeting on Theory and Mathematics in Biology and Medicine, held at the Centre for Interdisciplinary Mathematics in Uppsala, Sweden, December 2009: (pdf).

• Numerical Solution Methods in Stochastic Chemical Kinetics

  • PhD dissertation defense (pdf) succesfully presented the 28th of November 2008. Opponent: Wilhelm Huisinga. Grading committe: Jesper Oppelstrup, Stig Larsson and Lina von Sydow.

• Simulation of stochastic reaction-diffusion processes on unstructured meshes

  • Given at the Fraunhofer-Chalmers Centre in Gothenburg, Sweden, October 2008: (pdf).

• Parallel Solution of Multiscale Stochastic Chemical Kinetics

  • At the Dahlquist Fellowship Workshop at KTH, Stockholm, Sweden, October 2008: (pdf). The same talk was given at the ICNAAM conference at Kos, Greece, September 2008.

• Numeriska metoder för den kemiska masterekvationen

  • Licentitate seminar (pdf in swedish) succesfully presented the 27th of September 2006. External reviewer: Anders Szepessy, KTH.

• Numerical solution methods for the master equation

  • At the IHP-EU Network Workshop/Winter school 2005: "Breaking complexity" in Bad Honnef, Germany, December 2005: (pdf)